PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim12g011250.0.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family G2-like
Protein Properties Length: 234aa    MW: 26600.1 Da    PI: 6.3037
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim12g011250.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like43.28.8e-14110163255
             G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                         pr+ Wt++LH++F+++++  GG+    P++i + m   g++  ++k  LQ+YR 
  Sopim12g011250.0.1 110 PRVLWTEDLHRKFLDVIDANGGPWAVKPRHIWKEMAHFGISHCQIKNRLQRYRA 163
                         89***************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.85E-10107166IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.5E-12108165IPR009057Homeodomain-like
TIGRFAMsTIGR015572.3E-11110164IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MFPLPPSPVV EIGNFQSSII PTMQLHYDEL MSLQQSLFYY QPANDFSFLE NHGPMRLFGG  60
QSTINNNVFS YQDPFMLNPN VLNFNVAHQV QQELGQQPNN VGSTSRVKPP RVLWTEDLHR  120
KFLDVIDANG GPWAVKPRHI WKEMAHFGIS HCQIKNRLQR YRAKLNPNEA GGRKCKASSN  180
KELIQDVQEQ LKNVDGGKAD DNVYVPQLLT EADMIEAHIS PDNAFIEELL NWT*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755240.0HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010314079.11e-126PREDICTED: two-component response regulator ARR2-like
TrEMBLK4DCL11e-175K4DCL1_SOLLC; Uncharacterized protein
STRINGSolyc12g011250.1.11e-175(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14605411
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06800.17e-11G2-like family protein